- WholeCellViz is a web-based software program for visually analyzing whole-cell simulations.
WholeCellViz enables users to interactively analyze many aspects of cell physiology including:
Cell mass, volume, and shape, Metabolite, RNA, and protein copy numbers, Metabolic reaction fluxes,
Molecular machine statuses – DNA polymerase, RNA polymerase, ribosome, FtsZ ring, and the Chromosome copy number, superhelicity, integrity, and DNA binding status.
Currently, WholeCellViz provides access to cached simulations of the Gram-positive bacterium Mycoplasma genitalium.
- Icahn School of Medicine at Mount Sinai, Stanford University
- United States
- Markus Covert, Jonathan Karr, Ruby Lee
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