Complexity Explorer Santa Fe Institute


Software

WholeCellViz

WholeCellViz is a web-based software program for visually analyzing whole-cell simulations. WholeCellViz enables users to interactively analyze many aspects of cell physiology including: Cell mass, volume, and shape, Metabolite, RNA, and protein copy numbers, Metabolic reaction fluxes, Molecular machine statuses – DNA polymerase, RNA polymerase, ribosome, FtsZ ring, and the Chromosome copy number, superhelicity, integrity, and DNA binding status. Currently, WholeCellViz provides access to cached simulations of the Gram-positive bacterium Mycoplasma genitalium.

Institution
Icahn School of Medicine at Mount Sinai, Stanford University
Country
United States
Author
Markus Covert, Jonathan Karr, Ruby Lee
Topics
URL
http://www.wholecellviz.org/viz.php

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